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QuPath

Official Documentation: https://qupath.github.io/

What is QuPath​

QuPath is open source software for bioimage analysis.

QuPath is often used for digital pathology applications because it offers a powerful set of tools for working with whole slide images - but it can be applied to lots of other kinds of image as well.

Features include:

  • Powerful annotation & visualization tools using a modern JavaFX interface

  • Built-in algorithms for common tasks, including cell and tissue detection

  • Interactive machine learning, both for object and pixel classification

  • Compatibility with other popular open tools, including ImageJ, OpenCV, Java Topology Suite and OMERO

  • Support for many image formats through Bio-Formats and OpenSlide, including whole slide images and multiplexed data

  • Groovy scripting for customization and deeper data interrogation